[DOCKTESTERS] Sanger pipeline completed, small discrepancies with GNOS VCF (99.9905% accuracy)

[Miguel Vazquez]

Dear all,

The Sanger pipeline completed, after about 2 weeks of computing, for donor
DO50311

The results are the following:







*Comparison for DO50311 using Sanger---Common: 156299Extra: 1    - Example:
Y:58885197:GMissing: 14    - Example:
1:102887902:T,1:143165228:G,16:87047601:C*


The donor results for DKFZ yielded

Comparison for DO50311 using DKFZ
---
Common: 51087
Extra: 0
Missing: 0


In both cases I'm comparing agains the VCF file downloaded from GNOS. I've
updated the information here

https://wiki.oicr.on.ca/display/PANCANCER/Workflow+Testing+Data


Best regards

Miguel
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