[DOCKTESTERS] Fwd: [PAWG-TECH] Draft agenda for PCAWG-TECH teleconference

[Miguel Vazquez]

Keiran,

Its downloading the files still but in fact it does not seem to download
any BAS file. Could you please educate me a bit on what are these and how I
can create them?

Best

Miguel

On Tue, Oct 11, 2016 at 2:22 PM, Miguel Vazquez <miguel.vazquez at cnio.es>
wrote:

>
> 4. It looks like the *_pindel_input_* steps run for only 22-23 seconds
>> which could indicate a problem with either the headers or the absence of
>> the BAS file from the expected location.
>>
>>
> I think that you just revealed the problem. There is in fact no BAS files
> only BAM and BAI. There where BAS files for the test data HCC1143 which is
> the one that in fact work. It seems like BAS files are not gathered by
> gnos, could that be? or that my script fails to copy them. I'll try to
> gather a different sample with my client and check.
>
> Not knowing a thing about these files explains why I didn't notice. I'll
> get back to you when I know more.
>
> Best
>
> Miguel
>
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