[DOCKTESTERS] Broad dockers

[Gordon Saksena]

Btw the Broad docker MTA is now all set for OICR, UCSC, and OHSU.
Gordon

On Oct 12, 2016 3:11 PM, "Gordon Saksena" <gsaksena at broadinstitute.org>
wrote:

> Hi,
>
> I have approval for the Broad PCAWG dockers to go on the staging
> (non-password protected) portion of Dockstore.  The Github Repo and
> DockerHub image have permissions granted to folks who sent me their github
> and docker usernames.  This should be adequate for the initial rounds of
> testing.
>
> The tokens portion of the pipeline should be ready for folks to give it a
> spin.  The non-protected reference files are passed in via http in the
> inputs file, and it only needs the normal BAM.  It takes about 5 hours on a
> full size file using a couple cores.  Other portions will be added as they
> are split out and tested.
>
> While the current permissions setup is fine for testing, something
> different will be needed for post publication.  Many of the algorithms are
> (or will be) free only for educational or research use, but require a
> separate license for commercial use.  We should discuss how that use case
> can be supported, and whether it has implications on testing.
>
>
> https://hub.docker.com/r/broadinstitute/pcawg_tokens/
>
> https://github.com/broadinstitute/pcawg
> https://github.com/broadinstitute/pcawg/blob/master/tasks/tokens/taskdef.
> tokens.wdl
> https://github.com/broadinstitute/pcawg/blob/
> master/tasks/tokens/inputtest_http_refdata.tokens.json
>
> Gordon
>
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