[DOCKTESTERS] updates

[Francis Ouellette]

Hello All,

It was great for Junjun and I to see Miguel, Brian and Oliver in Boston. Junjun and Miguel (with some starting 
help from Brian) had a good first stab at testing a Sanger-SNV workflow with ICGC data … It didn’t quite work, 
but with the help of Dennis, we have some good next-step ideas on what to try next.

If either of you try something before Monday’s PCAWG-tech call please let me know, and I will add that 
to my docktester update.

Other update, Gordon (from the Broad) is now part of this list. I add below the full list membership.

The home page on the wiki is here:

https://wiki.oicr.on.ca/display/PANCANCER/PCAWG+Docker+%28Dockstore%29+Testing+Working+Group

So, we now have a growing google doc with the steps we have taken to get things going, and it will be 
good for others to use this for their testing, and to add their own “if-then” statements, and to make 
this a richer document which we will use for all testing.

https://docs.google.com/document/d/1EPo2Wgh-WJz75GdykgTI1fpm89yIdoGGHAyVlJ9PbcA/edit

(there is also a link to this page on the wiki: https://wiki.oicr.on.ca/display/PANCANCER/Workflow+Testing+SOP )

If you are doing a test, please consult with me and note it on this page:

https://wiki.oicr.on.ca/display/PANCANCER/Workflow+Testing+Data

Let me know if you have questions.

Right now we are trying to get simplest workflow (sanger ;) to work on ICGC data … We will test on TCGA data later, and 
other dockers as well.

Cheers to all, and again, thank you Miguel and Junjun for getting us started!

@bffo

 



brian.oconnor at oicr.on.ca
broconno at ucsc.edu
christina.Yung at oicr.on.ca
denis.Yuen at oicr.on.ca
ellrott at ohsu.edu
francis at oicr.on.ca
gsaksena at broadinstitute.org
junjun.zhang at oicr.on.ca
miguel.vazquez at cnio.es
ohofmann72 at gmail.com
solomon.shorser at oicr.on.ca
strucka at ohsu.edu
zhibin.Lu at oicr.on.ca