[DOCKTESTERS] sv-merge parameter questions

[Denis Yuen]

Hi,


Miguel is currently testing out the sv-merge workflow  ( https://bitbucket.org/weischenfeldt/pcawg_sv_merge) with real data (as opposed to the testing data in https://bitbucket.org/weischenfeldt/pcawg_sv_merge/src/ced14ae88a2fbfb7274eb71834121dca0de81236/Dockstore.json?at=docker&fileviewer=file-view-default )


I believe that he has some questions about where to find the vcf parameter files on either the icgc-portal or on GNOS for a particular donor. Could either of you shed some light on this? Thanks!



Denis Yuen
Senior Software Developer

Ontario Institute for Cancer Research
MaRS Centre
661 University Avenue
Suite 510
Toronto, Ontario, Canada M5G 0A3

Toll-free: 1-866-678-6427
Twitter: @OICR_news
www.oicr.on.ca<http://www.oicr.on.ca/>

This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.icgc.org/mailman/private/docktesters/attachments/20170417/09991b15/attachment-0001.html>