[DOCKTESTERS] Thanks!

[Miguel Vazquez]

Hi Junjun,

I think Jonas has been using my scripts to run some of the tests, maybe
George could try them as well, it should be very easy for him to try the
Sanger, Delly+DKFZ, BWA-Mem, and the BiasFilter.

https://github.com/mikisvaz/PCAWG-Docker-Test

He would just need to update the tokens for DACO access and the scripts
will take care of downloading the BAM files, running the workflows and
evaluating the result.

The documentation there is reasonably updated, but if this sounds good then
perhaps he could contact me and I could walk him through the details.

Best regards

Miguel

On Fri, Mar 10, 2017 at 9:51 PM, Junjun Zhang <Junjun.Zhang at oicr.on.ca>
wrote:

> Dear Docktesters,
>
> George Mihaiescu, cloud architect, of the Collaboratory at OICR plans to
> run some bioinformatics workflows to test Collab environment.
>
> Just thought this is a good opportunity to use as extra help for testing
> out the PCAWG dockerized workflows.
>
> Miguel, Denis and others, what workflows / datasets do you think would be
> good for George to run?
>
> Thanks,
> Junjun
>
>
>
> From: <docktesters-bounces+junjun.zhang=oicr.on.ca at lists.icgc.org> on
> behalf of Denis Yuen <Denis.Yuen at oicr.on.ca>
> Date: Wednesday, March 1, 2017 at 10:26 AM
> To: "docktesters at lists.icgc.org" <docktesters at lists.icgc.org>
> Subject: [DOCKTESTERS] Thanks!
>
> Hi,
>
> Just wanted to say thanks to Miguel and Jonas for keeping the workflow
> testing data page up-to-date.
>
> https://wiki.oicr.on.ca/display/PANCANCER/Workflow+Testing+Data
>
>
> As we work on new versions or debugging, it is invaluable to know what
> versions of the workflows have worked outside OICR, thanks!
>
>
>
> *Denis Yuen*
> Senior Software Developer
>
>
> *Ontario**Institute**for**Cancer**Research*
> MaRSCentre
> 661 University Avenue
> Suite510
> Toronto, Ontario,Canada M5G0A3
>
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