[DOCKTESTERS] DKFZ extended validation for 2 samples. Only differences in CNV

[Miguel Vazquez]

Hi Christina et al.

Like you asked me I've extended the validation from SNV to Indel and SNV
and also for germline

For the two samples all matches perfectly except SNV where we find some
large differences.

Best regards

Miguel

Report
~~~~~

Comparison of germline.indel for DO50311 using DKFZ
---
Common: 709060
Extra: 0
Missing: 0


Comparison of germline.snv.mnv for DO50311 using DKFZ
---
Common: 3850992
Extra: 0
Missing: 0


Comparison of somatic.cnv for DO50311 using DKFZ
---
Common: 731
Extra: 213
    - Example:
10:132510034:<DEL>,10:20596801:<NEUTRAL>,10:47674883:<NEUTRAL>
Missing: 190
    - Example:
10:100891940:<NEUTRAL>,10:104975905:<NEUTRAL>,10:119704960:<NEUTRAL>


Comparison of somatic.indel for DO50311 using DKFZ
---
Common: 26469
Extra: 0
Missing: 0


Comparison of somatic.snv.mnv for DO50311 using DKFZ
---
Common: 51087
Extra: 0
Missing: 0


Comparison of germline.indel for DO52140 using DKFZ
---
Common: 706572
Extra: 0
Missing: 0


Comparison of germline.snv.mnv for DO52140 using DKFZ
---
Common: 3833896
Extra: 0
Missing: 0


Comparison of somatic.cnv for DO52140 using DKFZ
---
Common: 275
Extra: 94
    - Example: 1:106505931:<LOH>,1:109068899:<DEL>,1:109359995:<DEL>
Missing: 286
    - Example: 10:88653561:<LOH>,11:179192:<LOH>,11:38252006:<LOH>


Comparison of somatic.indel for DO52140 using DKFZ
---
Common: 19347
Extra: 0
Missing: 0


Comparison of somatic.snv.mnv for DO52140 using DKFZ
---
Common: 37160
Extra: 0
Missing: 0
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