[DOCKTESTERS] DKFZ extended validation for 2 samples. Only differences in CNV

[Miguel Vazquez]

Excuse me, obviously I meant

*For the two samples all matches perfectly except CNV where we find some
large differences. *

On Fri, Dec 16, 2016 at 11:05 AM, Miguel Vazquez <miguel.vazquez at cnio.es>
wrote:

> Hi Christina et al.
>
> Like you asked me I've extended the validation from SNV to Indel and SNV
> and also for germline
>
> For the two samples all matches perfectly except SNV where we find some
> large differences.
>
> Best regards
>
> Miguel
>
> Report
> ~~~~~
>
> Comparison of germline.indel for DO50311 using DKFZ
> ---
> Common: 709060
> Extra: 0
> Missing: 0
>
>
> Comparison of germline.snv.mnv for DO50311 using DKFZ
> ---
> Common: 3850992
> Extra: 0
> Missing: 0
>
>
> Comparison of somatic.cnv for DO50311 using DKFZ
> ---
> Common: 731
> Extra: 213
>     - Example: 10:132510034:<DEL>,10:20596801:<NEUTRAL>,10:
> 47674883:<NEUTRAL>
> Missing: 190
>     - Example: 10:100891940:<NEUTRAL>,10:104975905:<NEUTRAL>,10:
> 119704960:<NEUTRAL>
>
>
> Comparison of somatic.indel for DO50311 using DKFZ
> ---
> Common: 26469
> Extra: 0
> Missing: 0
>
>
> Comparison of somatic.snv.mnv for DO50311 using DKFZ
> ---
> Common: 51087
> Extra: 0
> Missing: 0
>
>
> Comparison of germline.indel for DO52140 using DKFZ
> ---
> Common: 706572
> Extra: 0
> Missing: 0
>
>
> Comparison of germline.snv.mnv for DO52140 using DKFZ
> ---
> Common: 3833896
> Extra: 0
> Missing: 0
>
>
> Comparison of somatic.cnv for DO52140 using DKFZ
> ---
> Common: 275
> Extra: 94
>     - Example: 1:106505931:<LOH>,1:109068899:<DEL>,1:109359995:<DEL>
> Missing: 286
>     - Example: 10:88653561:<LOH>,11:179192:<LOH>,11:38252006:<LOH>
>
>
> Comparison of somatic.indel for DO52140 using DKFZ
> ---
> Common: 19347
> Extra: 0
> Missing: 0
>
>
> Comparison of somatic.snv.mnv for DO52140 using DKFZ
> ---
> Common: 37160
> Extra: 0
> Missing: 0
>
>
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