[DOCKTESTERS] [PAWG-TECH] Draft agenda for PCAWG-TECH teleconference
Christina Yung
christina.yung at oicr.on.ca
Tue Oct 4 11:22:55 EDT 2016
For testing BWA-mem with real data, you'll have to follow the SOP to
unalign the data first.
https://wiki.oicr.on.ca/display/PANCANCER/PCAWG+%28a.k.a.+PCAP+or+PAWG%29+Sequence+Submission+SOP+-+v1.0
Christina
On 16-10-04 11:04 AM, Denis Yuen wrote:
> Hi,
>
> Brian/Dennis: apparently there is a problem with the Sanger workflow
> docker container because it didn’t work for Miguel
> and Junjun,
> but worked on test data for Adam.
>
> Please advise what you would like tested. (I asked Adam to test
> “standard”
> dataset for Sanger workflow.
>
> I think the first useful test would be to see if the test data (
> https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker/blob/develop/test1.json
> ) works in JunJun/Miguel's environments. That way we can diagnose
> whether there is a difference in environment causing the issue or an
> issue with the data.
>
> bwa-mem is a good suggestion since it is also a useful test. It along
> with delly are the fastest workflows in this test, so running test
> data through them will quickly get results.
>
>
> ------------------------------------------------------------------------
> *From:* docktesters-bounces+denis.yuen=oicr.on.ca at lists.icgc.org
> [docktesters-bounces+denis.yuen=oicr.on.ca at lists.icgc.org] on behalf
> of Francis Ouellette [francis at oicr.on.ca]
> *Sent:* October 4, 2016 10:24 AM
> *To:* docktesters at lists.icgc.org
> *Cc:* kr2 at sanger.ac.uk
> *Subject:* Re: [DOCKTESTERS] [PAWG-TECH] Draft agenda for PCAWG-TECH
> teleconference
>
> Hi Miguel,
>
> I think it will be important for all to update this table:
>
> https://wiki.oicr.on.ca/pages/editpage.action?pageId=66309629
> <redir.aspx?REF=RvfbfDV5yN05OGyCIpsC9ASxL0fR2b8LXyACsFE86VQMEFAtZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9wYWdlcy9lZGl0cGFnZS5hY3Rpb24_cGFnZUlkPTY2MzA5NjI5>
>
> (in particular, Adam S, Miguel, Junjun and Christina).
>
> Other important message from Lincoln: We need to test BWA-mem workflow.
>
> Christina: do we need to “undo” a BAM file for that?
>
> We have a lot of testing to do, and next call is in 13 days (skipping
> next
> week because of thanksgiving holiday in Canada next Monday).
>
> Brian/Dennis: apparently there is a problem with the Sanger workflow
> docker container because it didn’t work for Miguel and
> Junjun,
> but worked on test data for Adam.
>
> Please advise what you would like tested. (I asked Adam to test
> “standard”
> dataset for Sanger workflow.
>
> thank you,
>
> @bffo
>
>
> --
> B.F. Francis Ouellette http://oicr.on.ca/person/francis-ouellette
> <redir.aspx?REF=JWalCiDf1UlQYmtMReruvClox9FrnvM0b6rjIyYTE2kMEFAtZ-zTCAFodHRwOi8vb2ljci5vbi5jYS9wZXJzb24vZnJhbmNpcy1vdWVsbGV0dGU.>
>
>
>
>
>
>
>
>
>> On Oct 4, 2016, at 3:22 AM, Miguel Vazquez <miguel.vazquez at cnio.es
>> <redir.aspx?REF=byg2Wac2qRTx271iVNlLbz5hO7X_wvcWc7QLZg6q0MMMEFAtZ-zTCAFtYWlsdG86bWlndWVsLnZhenF1ZXpAY25pby5lcw..>>
>> wrote:
>>
>> Hi all,
>>
>> I'm sorry to have missed the call yesterday, I got hung up with
>> administrative things. What did I miss?
>>
>> Best
>>
>> Miguel
>>
>> On Fri, Sep 30, 2016 at 6:19 PM, Francis Ouellette
>> <francis at oicr.on.ca
>> <redir.aspx?REF=b_ix-JnUsfv732eXF_BkaX4DCC3h_qsh6j4ePuMgkVcMEFAtZ-zTCAFtYWlsdG86ZnJhbmNpc0BvaWNyLm9uLmNh>>
>> wrote:
>>
>>
>>
>> Adam,
>>
>> Can you complete table on wiki:
>>
>> https://wiki.oicr.on.ca/pages/editpage.action?pageId=66309629
>> <redir.aspx?REF=RvfbfDV5yN05OGyCIpsC9ASxL0fR2b8LXyACsFE86VQMEFAtZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9wYWdlcy9lZGl0cGFnZS5hY3Rpb24_cGFnZUlkPTY2MzA5NjI5>
>>
>> Actually: Miguel and Junjun, can you also somplete that table?
>>
>> Thank you.
>>
>> Adam: can you try and make workflow work on one platform with the
>> same data that Miguel and Junjun tried?
>>
>> Thank you,
>>
>> @bffo
>>
>>
>>
>> --
>> B.F. Francis Ouellette http://oicr.on.ca/person/francis-ouellette
>> <redir.aspx?REF=JWalCiDf1UlQYmtMReruvClox9FrnvM0b6rjIyYTE2kMEFAtZ-zTCAFodHRwOi8vb2ljci5vbi5jYS9wZXJzb24vZnJhbmNpcy1vdWVsbGV0dGU.>
>>
>>
>>
>>
>>> On Sep 30, 2016, at 12:02 PM, Adam Struck <strucka at ohsu.edu
>>> <redir.aspx?REF=fa1nJOFm8Vv6GFRRz7EoWYlt7TWBlZl1K3qZCe-mdIoMEFAtZ-zTCAFtYWlsdG86c3RydWNrYUBvaHN1LmVkdQ..>>
>>> wrote:
>>>
>>> I thought I should add that I've run the Sanger pipeline on the
>>> test data in three separate environments using both CWL and WDL
>>> descriptors.
>>>
>>> Feel free to email me the errors you are seeing and I'll try and
>>> debug.
>>>
>>> Adam Struck
>>> Scientific Programmer
>>> Computational Biology
>>> Oregon Health and Science University
>>>
>>>
>>> On Sep 30, 2016, at 7:52 AM, Francis Ouellette
>>> <francis at oicr.on.ca
>>> <redir.aspx?REF=b_ix-JnUsfv732eXF_BkaX4DCC3h_qsh6j4ePuMgkVcMEFAtZ-zTCAFtYWlsdG86ZnJhbmNpc0BvaWNyLm9uLmNh>>
>>> wrote:
>>>
>>>> yes, good plan.
>>>>
>>>> @bffo
>>>>
>>>> --
>>>> B.F. Francis Ouellette
>>>> http://oicr.on.ca/person/francis-ouellette
>>>> <redir.aspx?REF=JWalCiDf1UlQYmtMReruvClox9FrnvM0b6rjIyYTE2kMEFAtZ-zTCAFodHRwOi8vb2ljci5vbi5jYS9wZXJzb24vZnJhbmNpcy1vdWVsbGV0dGU.>
>>>>
>>>>
>>>>
>>>>
>>>>> On Sep 30, 2016, at 10:46 AM, Miguel Vazquez
>>>>> <miguel.vazquez at cnio.es
>>>>> <redir.aspx?REF=byg2Wac2qRTx271iVNlLbz5hO7X_wvcWc7QLZg6q0MMMEFAtZ-zTCAFtYWlsdG86bWlndWVsLnZhenF1ZXpAY25pby5lcw..>>
>>>>> wrote:
>>>>>
>>>>> Dear Francis,
>>>>>
>>>>> I haven't had a chance to go at it again since the meeting, I
>>>>> got a new position in Norway, but next week I will try to find
>>>>> some time. I think I might just try another pipeline, since it
>>>>> seems like the Sanger pipeline needs fixing. Although perhaps
>>>>> I will first try Denis test data again and see if I can
>>>>> reproduce the error, after which we probably should contact
>>>>> the person in charge.
>>>>>
>>>>> Best
>>>>>
>>>>> M
>>>>>
>>>>> On Fri, Sep 30, 2016 at 3:52 PM, Francis Ouellette
>>>>> <francis at oicr.on.ca
>>>>> <redir.aspx?REF=b_ix-JnUsfv732eXF_BkaX4DCC3h_qsh6j4ePuMgkVcMEFAtZ-zTCAFtYWlsdG86ZnJhbmNpc0BvaWNyLm9uLmNh>>
>>>>> wrote:
>>>>>
>>>>> Dear Miguel and Junjun,
>>>>>
>>>>> Any more attempts on testing the PCAWG sanger docker
>>>>> container?
>>>>>
>>>>> If you reproduce the same error, we will need to involve
>>>>> Bryan and
>>>>> Keiran Raine <kr2 at sanger.ac.uk
>>>>> <redir.aspx?REF=HmUOvBPmbgPQYo1PKTUi9L9rA15ty5mW0vHB1kpDyGsMEFAtZ-zTCAFtYWlsdG86a3IyQHNhbmdlci5hYy51aw..>>
>>>>> (author of the container).
>>>>>
>>>>> Let’s get this one figured out.
>>>>>
>>>>> I am going to assume that the making of the docker
>>>>> container is what
>>>>> needs resolving.
>>>>>
>>>>> Brian: We may need your input here.
>>>>>
>>>>> Details of our current experiment should continue to be
>>>>> posted here:
>>>>>
>>>>> https://goo.gl/XX5BG9
>>>>> <redir.aspx?REF=igI2BjAHq_QnGThrHZYuLFrmGAY6ELrN4zfrWPAHS6EMEFAtZ-zTCAFodHRwczovL2dvby5nbC9YWDVCRzk.>
>>>>>
>>>>> Thank you all,
>>>>>
>>>>> francis
>>>>>
>>>>> PS would be good for others on list to follow directions
>>>>> on above google
>>>>> doc and also see if they can succeed on this workflow.
>>>>>
>>>>> Junjun and Miguel have tried different clouds, but used
>>>>> the sanger
>>>>> workflow, on the same data set.
>>>>>
>>>>> Thank you for trying to do this.
>>>>>
>>>>> Would be good if I heard back from anybody before Monday
>>>>> AM (tech call).
>>>>>
>>>>> @bffo
>>>>>
>>>>> PS I CCed Keiran, but waiting to hear back from Brian
>>>>> before we need to involve him some more.
>>>>> PPS Junjun/Miguel: maybe you can try the DKFZ docker as
>>>>> well? (on the same data set).
>>>>>
>>>>>
>>>>> --
>>>>> B.F. Francis Ouellette
>>>>> http://oicr.on.ca/person/francis-ouellette
>>>>> <redir.aspx?REF=JWalCiDf1UlQYmtMReruvClox9FrnvM0b6rjIyYTE2kMEFAtZ-zTCAFodHRwOi8vb2ljci5vbi5jYS9wZXJzb24vZnJhbmNpcy1vdWVsbGV0dGU.>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>> Begin forwarded message:
>>>>>>
>>>>>> *From: *Christina Yung <Christina.Yung at oicr.on.ca
>>>>>> <redir.aspx?REF=DUr_Vi0nS5bq1udzIo1XDg_xQUW7xxyULC8Jnyv6AWkMEFAtZ-zTCAFtYWlsdG86Q2hyaXN0aW5hLll1bmdAb2ljci5vbi5jYQ..>>
>>>>>> *Subject: **[PAWG-TECH] Draft agenda for PCAWG-TECH
>>>>>> teleconference*
>>>>>> *Date: *September 30, 2016 at 9:19:39 AM EDT
>>>>>> *To: *"pawg-tech (pawg-tech at lists.icgc.org
>>>>>> <redir.aspx?REF=FFAyN_mjYJTwTKEsmGtlFobisO8q_YthM1MF-TnHRwQMEFAtZ-zTCAFtYWlsdG86cGF3Zy10ZWNoQGxpc3RzLmljZ2Mub3Jn>)"
>>>>>> <pawg-tech at lists.icgc.org
>>>>>> <redir.aspx?REF=FFAyN_mjYJTwTKEsmGtlFobisO8q_YthM1MF-TnHRwQMEFAtZ-zTCAFtYWlsdG86cGF3Zy10ZWNoQGxpc3RzLmljZ2Mub3Jn>>
>>>>>>
>>>>>> Hi Everyone,
>>>>>>
>>>>>> Below is a draft agenda for Monday’s tech call. Please
>>>>>> let me know if you have any agenda items for discussion.
>>>>>>
>>>>>> https://wiki.oicr.on.ca/display/PANCANCER/2016-10-03+PCAWG-TECH+Teleconference
>>>>>> <redir.aspx?REF=hrZNQYyopojEt4RsxvxLpHEv17Ux_47NCqbz1tmRk14MEFAtZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kaXNwbGF5L1BBTkNBTkNFUi8yMDE2LTEwLTAzK1BDQVdHLVRFQ0grVGVsZWNvbmZlcmVuY2U.>
>>>>>>
>>>>>> Have a great weekend!
>>>>>>
>>>>>> Christina
>>>>>>
>>>>>>
>>>>>> Call Info
>>>>>>
>>>>>> *Usual Time 9 AM Eastern Time, Mondays*
>>>>>>
>>>>>> *UK 0208 322 2500*
>>>>>>
>>>>>> *Canada 1-866-220-6419*
>>>>>>
>>>>>> *United States **1-877-420-0272*
>>>>>>
>>>>>> *All Others Please see attached PDF file
>>>>>> <redir.aspx?REF=UaYtb5rD2emrUjcAbTAX6U4EAnm5qB2z5Vi0B1QGcSUMEFAtZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kb3dubG9hZC9hdHRhY2htZW50cy81Nzc3Njk5MC9QQVdHLVRFQ0gtVGVsZWNvbi1JbnRlcm5hdGlvbmFsLU51bWJlcnMucGRmP3ZlcnNpb249MSZtb2RpZmljYXRpb25EYXRlPTE0MDE0NTYwMDMwMDAmYXBpPXYy> with
>>>>>> a list of numbers for other countries.*
>>>>>>
>>>>>> *Participant Code 5910819#*
>>>>>>
>>>>>>
>>>>>> Agenda
>>>>>>
>>>>>>
>>>>>> *Time*
>>>>>>
>>>>>>
>>>>>>
>>>>>> *Item*
>>>>>>
>>>>>>
>>>>>>
>>>>>> *Who*
>>>>>>
>>>>>>
>>>>>>
>>>>>> *Attachments/Links*
>>>>>>
>>>>>> 5min
>>>>>>
>>>>>>
>>>>>>
>>>>>> Welcome. Wait for group members to log on
>>>>>>
>>>>>>
>>>>>>
>>>>>> Christina Yung
>>>>>> <redir.aspx?REF=kA2MQqBR7dlLy5DVjrScx3TQ4QVUChv10r2edO1MvXYMEFAtZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kaXNwbGF5L35jeXVuZw..>,
>>>>>> OICR
>>>>>>
>>>>>>
>>>>>>
>>>>>> 10min
>>>>>>
>>>>>>
>>>>>>
>>>>>> Overall status
>>>>>>
>>>>>>
>>>>>> Christina Yung
>>>>>> <redir.aspx?REF=kA2MQqBR7dlLy5DVjrScx3TQ4QVUChv10r2edO1MvXYMEFAtZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kaXNwbGF5L35jeXVuZw..>,
>>>>>> OICR
>>>>>>
>>>>>>
>>>>>> ·Linkouts to Most Current PCAWG Data
>>>>>> <redir.aspx?REF=zHmEKm3hcvDkgDEOpH89c3N9M8fkzgZTpqSFWM98vu8MEFAtZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kaXNwbGF5L1BBTkNBTkNFUi9MaW5rb3V0cyt0bytNb3N0K0N1cnJlbnQrUENBV0crRGF0YQ..>
>>>>>>
>>>>>> ·Report data issues to pcawg-data at icgc.org
>>>>>> <redir.aspx?REF=6-Noonl4B1m_lxiF1GPGzqi6oNBDz29_v3oxy7JFtANmclItZ-zTCAFtYWlsdG86cGNhd2ctZGF0YUBpY2djLm9yZw..>,
>>>>>> GNOS issue to: Help at annaisystems.com
>>>>>> <redir.aspx?REF=Gzmx9ajvwghXqh5HUCcZ6v0iFM1uiYj0j7IAJUKnCUFmclItZ-zTCAFtYWlsdG86SGVscEBhbm5haXN5c3RlbXMuY29t>
>>>>>>
>>>>>> ·From Boston F2F: PCAWG datasets & dependencies
>>>>>> <redir.aspx?REF=ZtA8RU1bldwMjZYd2Jvir5vCW8Wi8SSbfwi9yy3wzGJmclItZ-zTCAFodHRwczovL2RvY3MuZ29vZ2xlLmNvbS9zcHJlYWRzaGVldHMvZC8xVmx0TU1MTDVYRElGaXBNM3p6THFaT0dqNXotVXhJTUtMRGJzdURpRDJROC9lZGl0P3VzcD1zaGFyaW5n>
>>>>>>
>>>>>> *Action Items*
>>>>>>
>>>>>> 1.[Joachim] Consensus SV - final?
>>>>>>
>>>>>> 2.[Jakob] Consensus SNVs - changes to "SNV near indels"
>>>>>> annotation?
>>>>>>
>>>>>> 3.[Junjun] Specimen ID mapping for miRNA and methylation
>>>>>>
>>>>>> 4.[Jonathan & Joachim] Consensus calls for cell lines,
>>>>>> followed by filtering
>>>>>>
>>>>>> 5.[Matthias & Gordon] Docker containers for filtering methods
>>>>>>
>>>>>> 6.[Christina] Run alignment & variant workflows on
>>>>>> medulloblastoma sample (tumor 40x, normal 30x) from ICGC
>>>>>> benchmark to estimate false negative rate
>>>>>>
>>>>>> 7.[Christina] Follow up with institutes interested in
>>>>>> hosting PCAWG data long-term
>>>>>>
>>>>>> 8.[All] As per Jennifer's email on Sept 16, please
>>>>>> provide authorship information again or for the first
>>>>>> time using PCAWG Author Form
>>>>>> (http://goo.gl/forms/5Wq5x5X1DK
>>>>>> <redir.aspx?REF=fwZWD2Y3-FfW4xaNlQ8z38vmvMrRyioncvGhw7jVo4dmclItZ-zTCAFodHRwOi8vZ29vLmdsL2Zvcm1zLzVXcTV4NVgxREs.>).
>>>>>> Save the link "Edit your response" so you can go back
>>>>>> later to provide updates, for example about your evolving
>>>>>> role in writing specific papers.
>>>>>>
>>>>>> 9.[All] Contribute to the manuscripts on
>>>>>>
>>>>>> a.infrastructure:
>>>>>> https://docs.google.com/document/d/10alAxrWLdLSyhci-rfNuVH13rFXCJkaY_rzf1KJn7nc/edit
>>>>>> <redir.aspx?REF=wckzbzDo_cwIfaWHwhk6MGnEP_dXmBLJSg1KanlTcztmclItZ-zTCAFodHRwczovL2RvY3MuZ29vZ2xlLmNvbS9kb2N1bWVudC9kLzEwYWxBeHJXTGRMU3loY2ktcmZOdVZIMTNyRlhDSmthWV9yemYxS0puN25jL2VkaXQ.>
>>>>>>
>>>>>> b.variants: Paper ( https://goo.gl/g9CLsu
>>>>>> <redir.aspx?REF=GgM9MIyerqil4SkbtVve9VhWq5JXhJpHHwIifHw8_rdmclItZ-zTCAFodHRwczovL2dvby5nbC9nOUNMc3U.> ),
>>>>>> Supplement ( https://goo.gl/EWYh7e
>>>>>> <redir.aspx?REF=GcFIDvGDgDLMy1HHSk5olANgg6_MhfTo90MrURSTe19mclItZ-zTCAFodHRwczovL2dvby5nbC9FV1loN2U.> )
>>>>>>
>>>>>> c.Rogue's Gallery of Cancer Genome Sequencing Artifacts (
>>>>>> outline
>>>>>> <redir.aspx?REF=pm7iQUvfaoQa8LpKHESdyAQ-jrtHLoaUNKWYN28xwSxmclItZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kb3dubG9hZC9hdHRhY2htZW50cy82Njk1ODYwOS9Sb2d1ZXMlRTIlODAlOTklMjBHYWxsZXJ5JTIwb2YlMjBDYW5jZXIlMjBHZW5vbWUlMjBTZXF1ZW5jaW5nJTIwQXJ0ZWZhY3RzLnBkZj92ZXJzaW9uPTEmbW9kaWZpY2F0aW9uRGF0ZT0xNDY5ODAyNjQzMDAwJmFwaT12Mg..>
>>>>>> )
>>>>>>
>>>>>> 10.[Junjun] Discuss PCAWG vs DCC glossary terms at next
>>>>>> PCAWG-10/13 conference
>>>>>>
>>>>>> 10min
>>>>>>
>>>>>>
>>>>>>
>>>>>> Status of dockerizing workflows
>>>>>>
>>>>>>
>>>>>> Brian O'Connor
>>>>>> <redir.aspx?REF=lqdpknbfWMZfMIl5cuhYuFrn58RaibSr5T65i2Hp2YJmclItZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kaXNwbGF5L35ib2Nvbm5vcg..>,
>>>>>> UCSC
>>>>>>
>>>>>> Gordon Saksena
>>>>>> <redir.aspx?REF=FATJ5aNVsyapKuZeVJP0WNfGU6lEKYWFmLTAj4FxvUZmclItZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kaXNwbGF5L35nc2Frc2VuYUBicm9hZGluc3RpdHV0ZS5vcmc.>,
>>>>>> Broad
>>>>>>
>>>>>> Francis Ouellette
>>>>>> <redir.aspx?REF=OcbydD_0GIik6NxC9xH6JB2NCXnK5lmCvp6kdZmz361mclItZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kaXNwbGF5L35mcmFuY2lz>,
>>>>>> OICR
>>>>>>
>>>>>>
>>>>>> *Status of PCAWG Workflow ports to Dockstore*:
>>>>>>
>>>>>> Denis has been porting the Dockstore entries to CWL
>>>>>> version 1.0 which is part of our effort to publish
>>>>>> Dockstore (this doesn't affect the content of the
>>>>>> pipelines, simply their "descriptors" which allow them to
>>>>>> be runnable via Dockstore). Denis has also worked on
>>>>>> testing BWA-Mem, Sanger, EMBL (which all work with CWL
>>>>>> 1.0 and Kerian's test dataset) and has fixed issues with
>>>>>> DKFZ and is testing the latter with a real sample shortly.
>>>>>>
>>>>>> 1.BWA-Mem - Ready for testing by Francis' team
>>>>>>
>>>>>> 2.Sanger - Ready for testing by Francis' team.
>>>>>>
>>>>>> 3.EMBL - Ready for testing by Francis' team.
>>>>>>
>>>>>> 4.DKFZ - Ready for testing by Francis' team. I've
>>>>>> exchanged emails with Manuel Ballesteros who has been
>>>>>> testing this pipeline.
>>>>>>
>>>>>> 5.Broad - Variant calling (MuTect, dRanger,
>>>>>> snowman), need some work, Gordan sent details previously
>>>>>>
>>>>>> 6.OxoG - Waiting for Dimitri to provide OxoG docker
>>>>>>
>>>>>> 7.Variantbam
>>>>>>
>>>>>> 8.Consensus algorithm
>>>>>>
>>>>>> PCAWG Docker (Dockstore) Testing Working Group
>>>>>> <redir.aspx?REF=72e3iitmYU5QItGmgrvhVzgR7Hxyr5BWG3zera6saTlmclItZ-zTCAFodHRwczovL3dpa2kub2ljci5vbi5jYS9kaXNwbGF5L1BBTkNBTkNFUi9QQ0FXRytEb2NrZXIrJTI4RG9ja3N0b3JlJTI5K1Rlc3RpbmcrV29ya2luZytHcm91cA..>
>>>>>>
>>>>>> 5min
>>>>>>
>>>>>>
>>>>>>
>>>>>> Other business?
>>>>>>
>>>>>>
>>>>>>
>>>>>> Group
>>>>>>
>>>>>>
>>>>>>
>>>>>> **
>>>>>>
>>>>>> *Christina K. Yung, PhD***Project Manager, Cancer Genome
>>>>>> Collaboratory*Ontario Institute for Cancer Research*MaRS
>>>>>> Centre
>>>>>>
>>>>>> 661 University Avenue, Suite 510 Toronto, Ontario,
>>>>>> Canada M5G 0A3 Tel: 416-673-8578
>>>>>>
>>>>>> www.oicr.on.ca
>>>>>> <redir.aspx?REF=Mac0X_exoVEv9Md2YRbT6uLcyJVuG-i08_WXDOQY5iNmclItZ-zTCAFodHRwOi8vd3d3Lm9pY3Iub24uY2Ev>
>>>>>>
>>>>>> This message and any attachments may contain confidential
>>>>>> and/or privileged information for the sole use of the
>>>>>> intended recipient. Any review or distribution by anyone
>>>>>> other than the person for whom it was originally intended
>>>>>> is strictly prohibited. If you have received this message
>>>>>> in error, please contact the sender and delete all
>>>>>> copies. Opinions, conclusions or other information
>>>>>> contained in this message may not be that of the
>>>>>> organization.
>>>>>>
>>>>>> _______________________________________________ PAWG-TECH
>>>>>> mailing list PAWG-TECH at lists.icgc.org
>>>>>> <redir.aspx?REF=UHIopAFLFWWNUzsk0WS4_7gJkHJMRvpxgfuPr2bqdtRmclItZ-zTCAFtYWlsdG86UEFXRy1URUNIQGxpc3RzLmljZ2Mub3Jn>
>>>>>> https://lists.icgc.org/mailman/listinfo/pawg-tech
>>>>>> <redir.aspx?REF=KkeBLVhuCZSE1tmEWfuDQ9VAOtdsNOzpA9Ki2fu7kztmclItZ-zTCAFodHRwczovL2xpc3RzLmljZ2Mub3JnL21haWxtYW4vbGlzdGluZm8vcGF3Zy10ZWNo>
>>>>>>
>>>>> _______________________________________________
>>>>> docktesters mailing list docktesters at lists.icgc.org
>>>>> <redir.aspx?REF=qqg5ofwJ-ibjJSgkygYRa1h3GXP-AoL3pPy06jx62tNmclItZ-zTCAFtYWlsdG86ZG9ja3Rlc3RlcnNAbGlzdHMuaWNnYy5vcmc.>
>>>>> https://lists.icgc.org/mailman/listinfo/docktesters
>>>>> <redir.aspx?REF=lZnt34hpVuZ7gKgfrEZOWAPUZDiRyPFz1m-d1tmRGFJmclItZ-zTCAFodHRwczovL2xpc3RzLmljZ2Mub3JnL21haWxtYW4vbGlzdGluZm8vZG9ja3Rlc3RlcnM.>
>>>>>
>>>>>
>>>> _______________________________________________ docktesters
>>>> mailing list docktesters at lists.icgc.org
>>>> <redir.aspx?REF=qqg5ofwJ-ibjJSgkygYRa1h3GXP-AoL3pPy06jx62tNmclItZ-zTCAFtYWlsdG86ZG9ja3Rlc3RlcnNAbGlzdHMuaWNnYy5vcmc.>
>>>> https://lists.icgc.org/mailman/listinfo/docktesters
>>>> <redir.aspx?REF=lZnt34hpVuZ7gKgfrEZOWAPUZDiRyPFz1m-d1tmRGFJmclItZ-zTCAFodHRwczovL2xpc3RzLmljZ2Mub3JnL21haWxtYW4vbGlzdGluZm8vZG9ja3Rlc3RlcnM.>
>>>>
>> _______________________________________________ docktesters
>> mailing list docktesters at lists.icgc.org
>> <redir.aspx?REF=qqg5ofwJ-ibjJSgkygYRa1h3GXP-AoL3pPy06jx62tNmclItZ-zTCAFtYWlsdG86ZG9ja3Rlc3RlcnNAbGlzdHMuaWNnYy5vcmc.>
>> https://lists.icgc.org/mailman/listinfo/docktesters
>> <redir.aspx?REF=lZnt34hpVuZ7gKgfrEZOWAPUZDiRyPFz1m-d1tmRGFJmclItZ-zTCAFodHRwczovL2xpc3RzLmljZ2Mub3JnL21haWxtYW4vbGlzdGluZm8vZG9ja3Rlc3RlcnM.>
>>
>>
> This body part will be downloaded on demand.
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