[DOCKTESTERS] [PAWG-TECH] Draft agenda for PCAWG-TECH teleconference

Miguel Vazquez miguel.vazquez at cnio.es
Tue Oct 4 11:31:19 EDT 2016


I'm already on it

On Tue, Oct 4, 2016 at 5:04 PM, Denis Yuen <Denis.Yuen at oicr.on.ca> wrote:

> Hi,
>
> Brian/Dennis: apparently there is a problem with the Sanger workflow
>                 docker container because it didn’t work for Miguel and
> Junjun,
>                 but worked on test data for Adam.
>
> Please advise what you would like tested. (I asked Adam to test “standard”
> dataset for Sanger workflow.
>
> I think the first useful test would be to see if the test data (
> https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker/bl
> ob/develop/test1.json ) works in JunJun/Miguel's environments. That way
> we can diagnose whether there is a difference in environment causing the
> issue or an issue with the data.
>
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