[DOCKTESTERS] DKFZ bias filter docker

[Denis Yuen]

Hi,

Thanks for the heads-up, we can probably help out with writing the CWL descriptor for this, but I do have a few questions.

1) How does this relate to the existing dkfz workflow? ( https://github.com/ICGC-TCGA-PanCancer/dkfz_dockered_workflows ) Is this a step that follows that workflow or is this a portion of that workflow that has been split out?
2) Could we get a readme that describes how to use this?
3) Do you have some non-confidential small test data that we can use to run/test this quickly before running a real donor through this?

Thanks!

________________________________________
From: docktesters-bounces+denis.yuen=oicr.on.ca at lists.icgc.org [docktesters-bounces+denis.yuen=oicr.on.ca at lists.icgc.org] on behalf of Ivo Buchhalter [i.buchhalter at dkfz-heidelberg.de]
Sent: October 18, 2016 3:06 AM
To: docktesters at lists.icgc.org
Cc: Werner, Johannes; prinz; Schlesner, Matthias
Subject: [DOCKTESTERS] DKFZ bias filter docker

Dear dockertesters,

I was told to contact you regarding the DKFZ bias filter docker. The
docker is basically ready and it also passed internal testing. The
scripts and Dockerfile can be found here:
https://github.com/eilslabs/DKFZBiasFilter
Johannes and Manuel (CCed) have been working on bringing it into
Dockstore (they ran into a NFS problem). Johannes is currently on
vacation (until October 23rd).
Please let me know if it is sufficient to have the docker available on
Dockstore some time next week. Alternatively it might be possible that
you work with the scripts and Dockerfile on GitHub. If none of this
works I (or probably Manuel) can also try to get it running on Dockstore
some time later this week.

Best,
Ivo

PS: Sorry to the DKFZ people the email before bounced back because the
link of the email address on the Wiki had a typo.
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