[DOCKTESTERS] Delly workflow version in Dockstore

[Denis Yuen]

Hi,


My current understanding is that the last one would be the "canonical" version for the purposes of presenting the work that we did in PCAWG.

You have the correct version according to my notes as well.


I think the first two are experiments that were being done by Francesco to further improve the workflow for future use.

For now, do not believe you need to change versions.

________________________________
From: docktesters-bounces+denis.yuen=oicr.on.ca at lists.icgc.org <docktesters-bounces+denis.yuen=oicr.on.ca at lists.icgc.org> on behalf of Miguel Vazquez <mikisvaz at gmail.com>
Sent: April 26, 2017 6:47:24 AM
To: docktesters at lists.icgc.org; Brian O'Connor; Francesco Favero
Subject: [DOCKTESTERS] Delly workflow version in Dockstore

Hi all,

I'm trying to clarify the status of the Delly-DKFZ workflow testing. As far as I remember we found some discrepancies in CNV and SV that apparently traced back to changes in the Delly workflow.  After that I admit I must have lost track and I don't remember addressing any updates. I now see 3 different Delly workflows in Dockstore

https://dockstore.org/containers/registry.hub.docker.com/francescof/pcawg_delly_workflow
https://dockstore.org/containers/registry.hub.docker.com/francescof/finsen_delly_workflow
https://dockstore.org/containers/quay.io/pancancer/pcawg_delly_workflow

The last one is the one I used, more precisely version 2.0.1-cwl1.0

Should I change to a different one?

Best regards

Miguel
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