[DOCKTESTERS] SV-Merge validated 100% match on donors DO50311 and DO52526

[Miguel Vazquez]

Dear all,

Thanks again to Francesco I managed to validate the SV-Merge with 100%
overlap!

Comparison of SV for *DO50311* using SV-Merge
---


*Common: 330Extra: 0Missing: 0*

Comparison of SV for *DO52526* using SV-Merge
---


*Common: 86Extra: 0Missing: 0*

I'll update the wiki accordingly

Best regards

Miguel



On Thu, Apr 27, 2017 at 3:02 PM, Francesco Favero <
francesco.favero at bric.ku.dk> wrote:

> Dear Miguel,
>
> I’m glad it worked :).
>
> The final sv-merge call set to compare with is the one linked out here
> https://wiki.oicr.on.ca/display/PANCANCER/Linkouts+to+
> Most+Current+PCAWG+Data pointing to this sv-merge file set:
>
> https://www.synapse.org/#!Synapse:syn7596712
>
> <https://www.synapse.org/#%21Synapse:syn7596712>
> The final SV-merge vcf files are named <aliquot_id>.pcawg_
> consensus_1.6.<date>.somatic.sv.vcf.gz and would be the ones to compare
> with DO52526.somatic.sv.vcf.gz from the Docker run.
>
> Best
> Francesco
>
>
>
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