[DOCKTESTERS] updates?

[Miguel Vazquez]

Hi Francis,

Happy new year and congratulations on your new position. I hope you help
fund great and successful science.

I'll attend in the call latter today. I've only modest updates since the
last call which you are mostly aware of:

- I've completed the second donor for Sanger. There are now two donors for
both Delly+DKFZ and Sanger. I've updated the result in the minutes of the
call: DKFZ has big CNV differences, Sanger has small SNV and CNV
differences.

- Regarding DKFZ: I've made my results available to their team so that they
can investigate the differences in CNVs

- Regarding Sanger: I've ran the second sample again through the pipeline
to see if I get the same SNV and CNV differences. Its about to complete but
not before today's call.

- I've also tried to run the BWA-Mem on a real donor and failed like it
failed for the Test data. I haven't examined the issue in detail yet so
I'll get back to you on this, but I'm afraid I'm going to require some
assistance here.

I will have time after the call to talk

Kind regards

Miguel


On Mon, Jan 9, 2017 at 3:59 AM, Francis Ouellette <francis at oicr.on.ca>
wrote:

>
> Hi Miguel,
>
> Will you be on call tomorrow AM? I will be there, but I was wondering if
> you had updates?
>
> I’m not sure it will come up tomorrow morning, but it was announced at
> OICR last week that
> I am leaving OICR at the end of January. That said, I want to finish this
> docktesting work,
> and so I will stick around for that. I am starting a new position in
> Montréal as VP Scientific
> Affairs at Génome Québec, a funding agency here in Québec/Canada.
>
> Anyway Miguel, maybe you and I can talk in AM, maybe after the pcawg-tech
> call?
>
> All the best to all,
>
> francis
>
>
> _______________________________________________
> docktesters mailing list
> docktesters at lists.icgc.org
> https://lists.icgc.org/mailman/listinfo/docktesters
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.icgc.org/mailman/private/docktesters/attachments/20170109/9d1b78e9/attachment.html>