[DOCKTESTERS] - Crick

[Jonas Demeulemeester]

Hi all,

We’ve just joined in on the testing.

To give you a brief overview.
Mainly to test whether we could actually run containers locally, we’ve succesully run the DKFZ(+Delly) 2.0.1_cwl1.0 and Sanger 2.0.3 workflows for donor DO218695 (which was just one for which I had the files locally).
The BWA-Mem 2.6.8_1.2 workflow exited with an error.

We’re working on Openstack (CentOS-7.2-1604, Docker 1.12, 20 CPUs, 200GB RAM).

I’ll get cracking on the two test donors Miguel was using (DO50311 and DO52140) or two others from the test 62 set if you prefer.
Is the current main goal still to check consistency of the outputs?
If so, I’ll send the comparison script outputs to the list and will update the wiki accordingly when the runs complete.

Best,
Jonas

_________________________________
Jonas Demeulemeester, PhD
Postdoctoral Researcher
The Francis Crick Institute
1 Midland Road
London
NW1 1AT

T: +44 (0)20 3796 2594
M: +44 (0)7482 070730
E: jonas.demeulemeester at crick.ac.uk<%22mailto:>
W: www.crick.ac.uk<%22http://>




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